Thoth/README.md

license, language, base_model, pipeline_tag

license	language	base_model	pipeline_tag
cc-by-4.0	en	Qwen/Qwen3-8B	text-generation

🧬 Thoth

Thoth is a lightweight version of Thoth, designed for efficient and scalable biological protocol generation while retaining strong scientific reasoning ability.

• 📄 Paper: Unleashing Scientific Reasoning for Bio-experimental Protocol Generation via Structured Component-based Reward Mechanism (ICLR 2026)
• 🔗 GitHub: https://github.com/manglu097/Thoth
• 🤗 Dataset: https://huggingface.co/datasets/manglu3935/SciRecipe

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🔍 Model Overview

• Base model: Qwen3-8B
• Parameters: 8B
• GPU memory: ~16GB
• Primary task: Biological experimental protocol generation

Thoth is trained with the same Sketch-and-Fill paradigm and SCORE reward mechanism as Thoth, offering a strong performance–efficiency trade-off.

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🧠 Output Format

<think>  reasoning and planning </think>
<key>    structured machine-readable steps </key>
<orc>    natural language protocol </orc>
<note>   optional safety notes </note>

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🚀 Usage

from transformers import AutoModelForCausalLM, AutoTokenizer

tokenizer = AutoTokenizer.from_pretrained("manglu3935/Thoth")
model = AutoModelForCausalLM.from_pretrained("manglu3935/Thoth")

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⚠️ Intended Use

For fast scientific reasoning experiments and scalable research deployment.
Generated protocols must be reviewed by qualified experts prior to laboratory execution.

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📖 Citation

@article{sun2025unleashing,
  title={Unleashing Scientific Reasoning for Bio-experimental Protocol Generation via Structured Component-based Reward Mechanism},
  author={Sun, Haoran and Jiang, Yankai and Tang, Zhenyu and others},
  journal={arXiv preprint arXiv:2510.15600},
  year={2025}
}