158 lines
6.9 KiB
Markdown
158 lines
6.9 KiB
Markdown
---
|
||
license: apache-2.0
|
||
---
|
||
# Multilingual Medicine: Model, Dataset, Benchmark, Code
|
||
|
||
Covering English, Chinese, French, Hindi, Spanish, Hindi, Arabic So far
|
||
|
||
|
||
<p align="center">
|
||
👨🏻💻<a href="https://github.com/FreedomIntelligence/Apollo" target="_blank">Github</a> •📃 <a href="https://arxiv.org/abs/2403.03640" target="_blank">Paper</a> • 🌐 <a href="https://apollo.llmzoo.com/" target="_blank">Demo</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a>
|
||
<br> <a href="./README_zh.md"> 中文 </a> | <a href="./README.md"> English
|
||
</p>
|
||
|
||
|
||
|
||
## 🌈 Update
|
||
|
||
* **[2024.04.25]** [MedJamba](https://huggingface.co/FreedomIntelligence/Apollo-MedJamba) released, train and evaluation code refer to [repo](https://github.com/FreedomIntelligence/MedJamba).
|
||
* **[2024.03.07]** [Paper](https://arxiv.org/abs/2403.03640) released.
|
||
* **[2024.02.12]** <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a> and <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a> is published！🎉
|
||
* **[2024.01.23]** Apollo repo is published！🎉
|
||
|
||
|
||
## Results
|
||
🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-0.5B" target="_blank">Apollo-0.5B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-1.8B" target="_blank">Apollo-1.8B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-2B" target="_blank">Apollo-2B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-6B" target="_blank">Apollo-6B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-7B" target="_blank">Apollo-7B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-34B" target="_blank">Apollo-34B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-72B" target="_blank">Apollo-72B</a>
|
||
|
||
🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-MedJamba" target="_blank">MedJamba</a>
|
||
|
||
🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-0.5B-GGUF" target="_blank">Apollo-0.5B-GGUF</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-2B-GGUF" target="_blank">Apollo-2B-GGUF</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-6B-GGUF" target="_blank">Apollo-6B-GGUF</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-7B-GGUF" target="_blank">Apollo-7B-GGUF</a>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
## Usage Format
|
||
|
||
User:{query}\nAssistant:{response}<|endoftext|>
|
||
|
||
|
||
## Dataset & Evaluation
|
||
|
||
- Dataset
|
||
🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a>
|
||
|
||
<details><summary>Click to expand</summary>
|
||
|
||
|
||
|
||
- [Zip File](https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus/blob/main/ApolloCorpus.zip)
|
||
- [Data category](https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus/tree/main/train)
|
||
- Pretrain:
|
||
- data item:
|
||
- json_name: {data_source}_{language}_{data_type}.json
|
||
- data_type: medicalBook, medicalGuideline, medicalPaper, medicalWeb(from online forum), medicalWiki
|
||
- language: en(English), zh(chinese), es(spanish), fr(french), hi(Hindi)
|
||
- data_type: qa(generated qa from text)
|
||
- data_type==text: list of string
|
||
```
|
||
[
|
||
"string1",
|
||
"string2",
|
||
...
|
||
]
|
||
```
|
||
- data_type==qa: list of qa pairs(list of string)
|
||
```
|
||
[
|
||
[
|
||
"q1",
|
||
"a1",
|
||
"q2",
|
||
"a2",
|
||
...
|
||
],
|
||
...
|
||
]
|
||
```
|
||
- SFT:
|
||
- json_name: {data_source}_{language}.json
|
||
- data_type: code, general, math, medicalExam, medicalPatient
|
||
- data item: list of qa pairs(list of string)
|
||
```
|
||
[
|
||
[
|
||
"q1",
|
||
"a1",
|
||
"q2",
|
||
"a2",
|
||
...
|
||
],
|
||
...
|
||
]
|
||
```
|
||
|
||
|
||
</details>
|
||
|
||
|
||
|
||
- Evaluation
|
||
🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a>
|
||
|
||
<details><summary>Click to expand</summary>
|
||
|
||
- EN:
|
||
- [MedQA-USMLE](https://huggingface.co/datasets/GBaker/MedQA-USMLE-4-options)
|
||
- [MedMCQA](https://huggingface.co/datasets/medmcqa/viewer/default/test)
|
||
- [PubMedQA](https://huggingface.co/datasets/pubmed_qa): Because the results fluctuated too much, they were not used in the paper.
|
||
- [MMLU-Medical](https://huggingface.co/datasets/cais/mmlu)
|
||
- Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
|
||
- ZH:
|
||
- [MedQA-MCMLE](https://huggingface.co/datasets/bigbio/med_qa/viewer/med_qa_zh_4options_bigbio_qa/test)
|
||
- [CMB-single](https://huggingface.co/datasets/FreedomIntelligence/CMB): Not used in the paper
|
||
- Randomly sample 2,000 multiple-choice questions with single answer.
|
||
- [CMMLU-Medical](https://huggingface.co/datasets/haonan-li/cmmlu)
|
||
- Anatomy, Clinical_knowledge, College_medicine, Genetics, Nutrition, Traditional_chinese_medicine, Virology
|
||
- [CExam](https://github.com/williamliujl/CMExam): Not used in the paper
|
||
- Randomly sample 2,000 multiple-choice questions
|
||
|
||
|
||
- ES: [Head_qa](https://huggingface.co/datasets/head_qa)
|
||
- FR: [Frenchmedmcqa](https://github.com/qanastek/FrenchMedMCQA)
|
||
- HI: [MMLU_HI](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Arabic)
|
||
- Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
|
||
- AR: [MMLU_Ara](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Hindi)
|
||
- Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
|
||
|
||
|
||
</details>
|
||
|
||
|
||
## Results reproduction
|
||
<details><summary>Click to expand</summary>
|
||
|
||
**Waiting for Update**
|
||
|
||
|
||
|
||
</details>
|
||
|
||
|
||
|
||
|
||
## Citation
|
||
Please use the following citation if you intend to use our dataset for training or evaluation:
|
||
|
||
```
|
||
@misc{wang2024apollo,
|
||
title={Apollo: Lightweight Multilingual Medical LLMs towards Democratizing Medical AI to 6B People},
|
||
author={Xidong Wang and Nuo Chen and Junyin Chen and Yan Hu and Yidong Wang and Xiangbo Wu and Anningzhe Gao and Xiang Wan and Haizhou Li and Benyou Wang},
|
||
year={2024},
|
||
eprint={2403.03640},
|
||
archivePrefix={arXiv},
|
||
primaryClass={cs.CL}
|
||
}
|
||
```
|