初始化项目，由ModelHub XC社区提供模型

Model: FreedomIntelligence/Apollo-0.5B
Source: Original Platform

.gitattributes

@@ -0,0 +1,36 @@
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.arrow filter=lfs diff=lfs merge=lfs -text
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.ckpt filter=lfs diff=lfs merge=lfs -text
+*.ftz filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.joblib filter=lfs diff=lfs merge=lfs -text
+*.lfs.* filter=lfs diff=lfs merge=lfs -text
+*.mlmodel filter=lfs diff=lfs merge=lfs -text
+*.model filter=lfs diff=lfs merge=lfs -text
+*.msgpack filter=lfs diff=lfs merge=lfs -text
+*.npy filter=lfs diff=lfs merge=lfs -text
+*.npz filter=lfs diff=lfs merge=lfs -text
+*.onnx filter=lfs diff=lfs merge=lfs -text
+*.ot filter=lfs diff=lfs merge=lfs -text
+*.parquet filter=lfs diff=lfs merge=lfs -text
+*.pb filter=lfs diff=lfs merge=lfs -text
+*.pickle filter=lfs diff=lfs merge=lfs -text
+*.pkl filter=lfs diff=lfs merge=lfs -text
+*.pt filter=lfs diff=lfs merge=lfs -text
+*.pth filter=lfs diff=lfs merge=lfs -text
+*.rar filter=lfs diff=lfs merge=lfs -text
+*.safetensors filter=lfs diff=lfs merge=lfs -text
+saved_model/**/* filter=lfs diff=lfs merge=lfs -text
+*.tar.* filter=lfs diff=lfs merge=lfs -text
+*.tar filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.wasm filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
+*tfevents* filter=lfs diff=lfs merge=lfs -text
+model.safetensors filter=lfs diff=lfs merge=lfs -text

README.md

@@ -0,0 +1,157 @@
+---
+license: apache-2.0
+---
+# Multilingual Medicine: Model, Dataset, Benchmark, Code
+
+Covering English, Chinese, French, Hindi, Spanish, Hindi, Arabic So far
+
+
+<p align="center">
+   👨🏻‍💻<a href="https://github.com/FreedomIntelligence/Apollo" target="_blank">Github</a> •📃 <a href="https://arxiv.org/abs/2403.03640" target="_blank">Paper</a> • 🌐 <a href="https://apollo.llmzoo.com/" target="_blank">Demo</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a> 
+   <br>  <a href="./README_zh.md"> 中文 </a> | <a href="./README.md"> English
+</p>
+
+![Apollo](assets/apollo_medium_final.png)
+
+## 🌈 Update
+
+* **[2024.04.25]** [MedJamba](https://huggingface.co/FreedomIntelligence/Apollo-MedJamba) released, train and evaluation code refer to [repo](https://github.com/FreedomIntelligence/MedJamba).
+* **[2024.03.07]** [Paper](https://arxiv.org/abs/2403.03640) released.
+* **[2024.02.12]** <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a> and  <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a>  is published！🎉
+* **[2024.01.23]** Apollo repo is published！🎉
+
+
+## Results
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-0.5B" target="_blank">Apollo-0.5B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-1.8B" target="_blank">Apollo-1.8B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-2B" target="_blank">Apollo-2B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-6B" target="_blank">Apollo-6B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-7B" target="_blank">Apollo-7B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-34B" target="_blank">Apollo-34B</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-72B" target="_blank">Apollo-72B</a>  
+   
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-MedJamba" target="_blank">MedJamba</a>
+
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-0.5B-GGUF" target="_blank">Apollo-0.5B-GGUF</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-2B-GGUF" target="_blank">Apollo-2B-GGUF</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-6B-GGUF" target="_blank">Apollo-6B-GGUF</a> • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-7B-GGUF" target="_blank">Apollo-7B-GGUF</a> 
+   
+   
+   
+   ![Apollo](assets/result.png)
+      
+
+## Usage Format
+
+User:{query}\nAssistant:{response}<|endoftext|>
+
+
+## Dataset & Evaluation
+
+- Dataset
+  🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus" target="_blank">ApolloCorpus</a>
+  
+  <details><summary>Click to expand</summary>
+
+    ![Apollo](assets/dataset.png)
+
+    - [Zip File](https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus/blob/main/ApolloCorpus.zip)
+    - [Data category](https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus/tree/main/train)
+       - Pretrain:
+         - data item:
+            - json_name: {data_source}_{language}_{data_type}.json
+            - data_type: medicalBook, medicalGuideline, medicalPaper, medicalWeb(from online forum), medicalWiki
+            - language: en(English), zh(chinese), es(spanish), fr(french), hi(Hindi)
+            - data_type: qa(generated qa from text)
+            - data_type==text: list of string
+              ```
+              [
+                "string1",
+                "string2",
+                ...
+              ]
+              ```
+            - data_type==qa: list of qa pairs(list of string)
+              ```
+              [
+                [
+                  "q1",
+                  "a1",
+                  "q2",
+                  "a2",
+                  ...
+                ],
+                ...
+              ]
+              ```
+      - SFT:
+          - json_name: {data_source}_{language}.json
+          - data_type: code, general, math, medicalExam, medicalPatient
+          - data item: list of qa pairs(list of string)
+            ```
+              [
+                [
+                  "q1",
+                  "a1",
+                  "q2",
+                  "a2",
+                  ...
+                ],
+                ...
+              ]
+            ```
+
+
+   </details>
+
+
+
+- Evaluation
+  🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/XMedbench" target="_blank">XMedBench</a>
+
+  <details><summary>Click to expand</summary>
+  
+     - EN:
+       - [MedQA-USMLE](https://huggingface.co/datasets/GBaker/MedQA-USMLE-4-options) 
+       - [MedMCQA](https://huggingface.co/datasets/medmcqa/viewer/default/test)
+       - [PubMedQA](https://huggingface.co/datasets/pubmed_qa): Because the results fluctuated too much, they were not used in the paper.
+       - [MMLU-Medical](https://huggingface.co/datasets/cais/mmlu)
+         - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - ZH:
+       - [MedQA-MCMLE](https://huggingface.co/datasets/bigbio/med_qa/viewer/med_qa_zh_4options_bigbio_qa/test)
+       - [CMB-single](https://huggingface.co/datasets/FreedomIntelligence/CMB): Not used in the paper
+         - Randomly sample 2,000 multiple-choice questions with single answer.
+       - [CMMLU-Medical](https://huggingface.co/datasets/haonan-li/cmmlu)
+         - Anatomy, Clinical_knowledge, College_medicine, Genetics, Nutrition, Traditional_chinese_medicine, Virology
+       - [CExam](https://github.com/williamliujl/CMExam): Not used in the paper
+         - Randomly sample 2,000 multiple-choice questions
+
+
+     - ES: [Head_qa](https://huggingface.co/datasets/head_qa)
+     - FR: [Frenchmedmcqa](https://github.com/qanastek/FrenchMedMCQA)
+     - HI: [MMLU_HI](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Arabic)
+        - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - AR: [MMLU_Ara](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Hindi)
+        - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+
+
+   </details>
+
+
+## Results reproduction
+   <details><summary>Click to expand</summary>
+
+   **Waiting for Update**
+      
+
+
+   </details>
+
+
+
+
+##  Citation
+Please use the following citation if you intend to use our dataset for training or evaluation:
+
+```
+@misc{wang2024apollo,
+   title={Apollo: Lightweight Multilingual Medical LLMs towards Democratizing Medical AI to 6B People},
+   author={Xidong Wang and Nuo Chen and Junyin Chen and Yan Hu and Yidong Wang and Xiangbo Wu and Anningzhe Gao and Xiang Wan and Haizhou Li and Benyou Wang},
+   year={2024},
+   eprint={2403.03640},
+   archivePrefix={arXiv},
+   primaryClass={cs.CL}
+}
+```

added_tokens.json

@@ -0,0 +1,6 @@
+{
+  "<|endoftext|>": 151643,
+  "<|extra_0|>": 151646,
+  "<|im_end|>": 151645,
+  "<|im_start|>": 151644
+}

config.json

@@ -0,0 +1,28 @@
+{
+  "_name_or_path": "apollo-0.5B",
+  "architectures": [
+    "Qwen2ForCausalLM"
+  ],
+  "attention_dropout": 0.0,
+  "bos_token_id": 151643,
+  "eos_token_id": 151643,
+  "hidden_act": "silu",
+  "hidden_size": 1024,
+  "initializer_range": 0.02,
+  "intermediate_size": 2816,
+  "max_position_embeddings": 32768,
+  "max_window_layers": 21,
+  "model_type": "qwen2",
+  "num_attention_heads": 16,
+  "num_hidden_layers": 24,
+  "num_key_value_heads": 16,
+  "rms_norm_eps": 1e-06,
+  "rope_theta": 1000000.0,
+  "sliding_window": 32768,
+  "tie_word_embeddings": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.38.2",
+  "use_cache": true,
+  "use_sliding_window": false,
+  "vocab_size": 151936
+}

configuration.json

@@ -0,0 +1 @@
+{"framework": "pytorch", "task": "text-generation", "allow_remote": true}

generation_config.json

@@ -0,0 +1,6 @@
+{
+  "bos_token_id": 151643,
+  "eos_token_id": 151643,
+  "max_new_tokens": 2048,
+  "transformers_version": "4.38.2"
+}

model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:37faeb62a22f066cbefd69fd23e4b9369bf1bf10fb5c16d92c018341f00250c3
+size 1855983640

special_tokens_map.json

@@ -0,0 +1,20 @@
+{
+  "additional_special_tokens": [
+    "<|im_start|>",
+    "<|im_end|>"
+  ],
+  "eos_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "<|extra_0|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

@@ -0,0 +1,55 @@
+{
+  "add_prefix_space": false,
+  "added_tokens_decoder": {
+    "151643": {
+      "content": "<|endoftext|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "151644": {
+      "content": "<|im_start|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "151645": {
+      "content": "<|im_end|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "151646": {
+      "content": "<|extra_0|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "additional_special_tokens": [
+    "<|im_start|>",
+    "<|im_end|>"
+  ],
+  "bos_token": null,
+  "chat_template": "{% for message in messages %}{{'<|im_start|>' + message['role'] + '\n' + message['content'] + '<|im_end|>' + '\n'}}{% endfor %}{% if add_generation_prompt %}{{ '<|im_start|>assistant\n' }}{% endif %}",
+  "clean_up_tokenization_spaces": false,
+  "eos_token": "<|endoftext|>",
+  "errors": "replace",
+  "max_length": null,
+  "model_max_length": 32768,
+  "pad_to_multiple_of": null,
+  "pad_token": "<|extra_0|>",
+  "pad_token_type_id": 0,
+  "padding_side": "left",
+  "split_special_tokens": false,
+  "tokenizer_class": "Qwen2Tokenizer",
+  "unk_token": null
+}