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Model: Divij/Qwen2.5-3B-Instruct-sft-without-thoughts
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---
base_model: Qwen/Qwen2.5-3B-Instruct
library_name: transformers
license: other
pipeline_tag: text-generation
tags:
- sft
- scientific-reasoning
- instruction-tuning
- open-instruct
---
# Divij/Qwen2.5-3B-Instruct-sft-without-thoughts
Supervised fine-tune of [`Qwen/Qwen2.5-3B-Instruct`](https://huggingface.co/Qwen/Qwen2.5-3B-Instruct) on a scientific-methodology
instruction dataset, where each assistant response is a plain step-by-step research methodology.
The project goal is to compare whether including explicit `<Thought_i>` reasoning
traces alongside each `<Step_i>` action during SFT produces stronger scientific-methodology
generators than training on step-only plans.
## Variant
This checkpoint is the **without-thoughts** variant:
The assistant target is only `<Step_1>...</Step_1>` ... `<Step_n>...</Step_n>` — the reasoning traces are excluded. Trained with `max_seq_length=2048`.
## Training data
- Source: `sft_without_thoughts.jsonl` from the `verl_scientific_discovery`
repeated-sampling pipeline.
- 4,990 `messages`-format examples (`system` + `user` + `assistant`).
- Each assistant response is a step-by-step research methodology for a given
`Research Goal` + `Constraints` prompt.
## Training setup
- **Framework:** [open-instruct](https://github.com/allenai/open-instruct) `finetune.py` (accelerate + FSDP2).
- **Hardware:** 2× NVIDIA H100 NVL (96 GB).
- **Precision:** bf16 mixed precision.
- **Attention:** FlashAttention-2.
- **Memory:** gradient checkpointing enabled.
### Hyperparameters
| | |
|---|---|
| `max_seq_length` | **2048** |
| `num_train_epochs` | 3 |
| `per_device_train_batch_size` | 1 |
| `gradient_accumulation_steps` | 8 |
| Effective batch size | 16 (1 × 2 GPU × 8 accum) |
| `learning_rate` | 2e-5 |
| `lr_scheduler_type` | linear |
| `warmup_ratio` | 0.03 |
| `weight_decay` | 0.0 |
| `seed` | 42 |
| Optimizer | fused AdamW |
| Total optimization steps | 936 |
| **Final training loss** | **2.054** |
The chat template is inherited from the base model
(`Qwen/Qwen2.5-3B-Instruct`). Labels are masked on the `system` and
`user` turns so only the assistant response contributes to the loss
(open-instruct's `sft_tulu_tokenize_and_truncate_v1` transform).
## Usage
```python
from transformers import AutoModelForCausalLM, AutoTokenizer
import torch
repo = "Divij/Qwen2.5-3B-Instruct-sft-without-thoughts"
tokenizer = AutoTokenizer.from_pretrained(repo)
model = AutoModelForCausalLM.from_pretrained(
repo,
torch_dtype=torch.bfloat16,
device_map="auto",
)
messages = [
{"role": "system", "content": "Given a research goal and constraints, provide a step-by-step methodology.\n\nFormat:\n<Step_1>...</Step_1>\n<Step_2>...</Step_2>"},
{"role": "user", "content": (
"You are given a scientific research problem.\n\n"
"Research Goal:\n<your research goal here>\n\n"
"Constraints:\n1) <constraint 1>\n2) <constraint 2>"
)},
]
inputs = tokenizer.apply_chat_template(
messages,
add_generation_prompt=True,
return_tensors="pt",
).to(model.device)
output = model.generate(
inputs,
max_new_tokens=1024,
do_sample=True,
temperature=0.7,
top_p=0.9,
)
print(tokenizer.decode(output[0][inputs.shape[-1]:], skip_special_tokens=True))
```
## Notes
- **Context length.** Use `max_seq_length`**2048** at inference time to match
the training regime; generations longer than this were not seen during training.
- **Intended use.** Research artifact for generating structured scientific research
plans. Not aligned for general-purpose chat or safety-critical use.
- **Compared to sibling.** A matching **with-thoughts** checkpoint at
[`Divij/Qwen2.5-3B-Instruct-sft-with-thoughts`](https://huggingface.co/Divij/Qwen2.5-3B-Instruct-sft-with-thoughts) is trained on
the same data but with the opposite treatment of reasoning traces.

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{%- if tools %}
{{- '<|im_start|>system\n' }}
{%- if messages[0]['role'] == 'system' %}
{{- messages[0]['content'] }}
{%- else %}
{{- 'You are Qwen, created by Alibaba Cloud. You are a helpful assistant.' }}
{%- endif %}
{{- "\n\n# Tools\n\nYou may call one or more functions to assist with the user query.\n\nYou are provided with function signatures within <tools></tools> XML tags:\n<tools>" }}
{%- for tool in tools %}
{{- "\n" }}
{{- tool | tojson }}
{%- endfor %}
{{- "\n</tools>\n\nFor each function call, return a json object with function name and arguments within <tool_call></tool_call> XML tags:\n<tool_call>\n{\"name\": <function-name>, \"arguments\": <args-json-object>}\n</tool_call><|im_end|>\n" }}
{%- else %}
{%- if messages[0]['role'] == 'system' %}
{{- '<|im_start|>system\n' + messages[0]['content'] + '<|im_end|>\n' }}
{%- else %}
{{- '<|im_start|>system\nYou are Qwen, created by Alibaba Cloud. You are a helpful assistant.<|im_end|>\n' }}
{%- endif %}
{%- endif %}
{%- for message in messages %}
{%- if (message.role == "user") or (message.role == "system" and not loop.first) or (message.role == "assistant" and not message.tool_calls) %}
{{- '<|im_start|>' + message.role + '\n' + message.content + '<|im_end|>' + '\n' }}
{%- elif message.role == "assistant" %}
{{- '<|im_start|>' + message.role }}
{%- if message.content %}
{{- '\n' + message.content }}
{%- endif %}
{%- for tool_call in message.tool_calls %}
{%- if tool_call.function is defined %}
{%- set tool_call = tool_call.function %}
{%- endif %}
{{- '\n<tool_call>\n{"name": "' }}
{{- tool_call.name }}
{{- '", "arguments": ' }}
{{- tool_call.arguments | tojson }}
{{- '}\n</tool_call>' }}
{%- endfor %}
{{- '<|im_end|>\n' }}
{%- elif message.role == "tool" %}
{%- if (loop.index0 == 0) or (messages[loop.index0 - 1].role != "tool") %}
{{- '<|im_start|>user' }}
{%- endif %}
{{- '\n<tool_response>\n' }}
{{- message.content }}
{{- '\n</tool_response>' }}
{%- if loop.last or (messages[loop.index0 + 1].role != "tool") %}
{{- '<|im_end|>\n' }}
{%- endif %}
{%- endif %}
{%- endfor %}
{%- if add_generation_prompt %}
{{- '<|im_start|>assistant\n' }}
{%- endif %}

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{
"architectures": [
"Qwen2ForCausalLM"
],
"attention_dropout": 0.0,
"bos_token_id": 151643,
"dtype": "bfloat16",
"eos_token_id": 151645,
"hidden_act": "silu",
"hidden_size": 2048,
"initializer_range": 0.02,
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"full_attention",
"full_attention",
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],
"max_position_embeddings": 32768,
"max_window_layers": 70,
"model_type": "qwen2",
"num_attention_heads": 16,
"num_hidden_layers": 36,
"num_key_value_heads": 2,
"pad_token_id": null,
"rms_norm_eps": 1e-06,
"rope_parameters": {
"rope_theta": 1000000.0,
"rope_type": "default"
},
"sliding_window": null,
"tie_word_embeddings": true,
"transformers_version": "5.5.3",
"use_cache": true,
"use_sliding_window": false,
"vocab_size": 151936
}

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{
"eos_token_id": 151645,
"transformers_version": "5.5.3"
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{
"add_prefix_space": false,
"backend": "tokenizers",
"bos_token": null,
"clean_up_tokenization_spaces": false,
"eos_token": "<|im_end|>",
"errors": "replace",
"extra_special_tokens": [
"<|im_start|>",
"<|im_end|>",
"<|object_ref_start|>",
"<|object_ref_end|>",
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"is_local": false,
"model_max_length": 131072,
"pad_token": "<|endoftext|>",
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"tokenizer_class": "Qwen2Tokenizer",
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}