初始化项目，由ModelHub XC社区提供模型
Model: yashm/qwen25-15b-biomed-finetuned Source: Original Platform
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README.md
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README.md
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---
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library_name: transformers
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tags:
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- qwen
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- biomedical
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- bioinformatics
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- fine-tuned
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- medical
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- llm
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license: apache-2.0
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base_model:
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- Qwen/Qwen2.5-1.5B
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---
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# Qwen2.5-1.5B Biomedical Fine-Tuned Model
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This model is a biomedical and bioinformatics fine-tuned version of **Qwen/Qwen2.5-1.5B**, fine-tuned by **Dr. YMG**.
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---
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## Model Details
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### Model Description
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This model is a domain-adapted and instruction fine-tuned large language model specialized for biomedical and bioinformatics tasks.
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- Developed by: Dr. YMG
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- Model type: Causal Language Model (LLM)
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- Language(s): English
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- License: Apache 2.0
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- Finetuned from model: Qwen/Qwen2.5-1.5B
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### Model Sources
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- Repository: https://huggingface.co/yashm/qwen25-15b-biomed-finetuned
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- Base Model: https://huggingface.co/Qwen/Qwen2.5-1.5B
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---
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## Uses
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### Direct Use
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- Biomedical concept explanation
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- Bioinformatics discussions
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- Research assistance
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- Literature summarization
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- Gene expression & biomarker discussion
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### Out-of-Scope Use
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- Clinical diagnosis
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- Medical treatment decisions
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- Drug prescription
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- Patient-specific advice
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---
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## Example Usage
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```python
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from transformers import AutoTokenizer, AutoModelForCausalLM, pipeline
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import torch
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MODEL_ID = "yashm/qwen25-15b-biomed-finetuned"
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tokenizer = AutoTokenizer.from_pretrained(MODEL_ID, trust_remote_code=True)
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model = AutoModelForCausalLM.from_pretrained(
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MODEL_ID,
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device_map="auto",
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dtype=torch.bfloat16,
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trust_remote_code=True,
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)
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pipe = pipeline("text-generation", model=model, tokenizer=tokenizer)
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prompt = "Explain gene expression in simple terms."
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out = pipe(prompt, max_new_tokens=200)
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print(out[0]["generated_text"])
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```
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---
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## Training Details
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- Base model: Qwen/Qwen2.5-1.5B
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- Method: LoRA (PEFT)
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- Precision: BF16
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- Quantization: 4-bit QLoRA
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---
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## Limitations
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- May hallucinate
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- Not medically validated
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- Limited to training data
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---
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## Disclaimer
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For research and educational use only. Not for clinical decision-making.
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---
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## Author
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Fine-tuned by Dr. YMG
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added_tokens.json
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{
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"</tool_call>": 151658,
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"<tool_call>": 151657,
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"<|box_end|>": 151649,
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"<|box_start|>": 151648,
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"<|endoftext|>": 151643,
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"<|file_sep|>": 151664,
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"<|fim_middle|>": 151660,
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"<|fim_pad|>": 151662,
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"<|fim_prefix|>": 151659,
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"<|fim_suffix|>": 151661,
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"<|im_end|>": 151645,
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"<|vision_start|>": 151652
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}
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{%- if tools %}
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{{- '<|im_start|>system\n' }}
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{%- if messages[0]['role'] == 'system' %}
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{{- messages[0]['content'] }}
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{%- else %}
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{{- 'You are a helpful assistant.' }}
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{%- endif %}
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{{- "\n\n# Tools\n\nYou may call one or more functions to assist with the user query.\n\nYou are provided with function signatures within <tools></tools> XML tags:\n<tools>" }}
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{%- for tool in tools %}
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{{- "\n" }}
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{{- tool | tojson }}
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{%- endfor %}
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{{- "\n</tools>\n\nFor each function call, return a json object with function name and arguments within <tool_call></tool_call> XML tags:\n<tool_call>\n{\"name\": <function-name>, \"arguments\": <args-json-object>}\n</tool_call><|im_end|>\n" }}
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{%- else %}
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{%- if messages[0]['role'] == 'system' %}
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{{- '<|im_start|>system\n' + messages[0]['content'] + '<|im_end|>\n' }}
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{%- else %}
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{{- '<|im_start|>system\nYou are a helpful assistant.<|im_end|>\n' }}
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{%- endif %}
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{%- endif %}
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{%- for message in messages %}
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{%- if (message.role == "user") or (message.role == "system" and not loop.first) or (message.role == "assistant" and not message.tool_calls) %}
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{{- '<|im_start|>' + message.role + '\n' + message.content + '<|im_end|>' + '\n' }}
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{%- elif message.role == "assistant" %}
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{{- '<|im_start|>' + message.role }}
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{%- if message.content %}
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{{- '\n' + message.content }}
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{%- endif %}
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{%- for tool_call in message.tool_calls %}
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{%- if tool_call.function is defined %}
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{%- set tool_call = tool_call.function %}
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{%- endif %}
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{{- '\n<tool_call>\n{"name": "' }}
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{{- tool_call.name }}
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{{- '", "arguments": ' }}
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{{- tool_call.arguments | tojson }}
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{{- '}\n</tool_call>' }}
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{%- endfor %}
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{{- '<|im_end|>\n' }}
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{%- elif message.role == "tool" %}
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{%- if (loop.index0 == 0) or (messages[loop.index0 - 1].role != "tool") %}
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{{- '<|im_start|>user' }}
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{%- endif %}
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{{- '\n<tool_response>\n' }}
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{{- message.content }}
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{{- '\n</tool_response>' }}
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{%- if loop.last or (messages[loop.index0 + 1].role != "tool") %}
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{{- '<|im_end|>\n' }}
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{%- endif %}
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{%- endif %}
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{%- endfor %}
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{%- if add_generation_prompt %}
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{{- '<|im_start|>assistant\n' }}
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{%- endif %}
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config.json
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{
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"architectures": [
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"Qwen2ForCausalLM"
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],
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"attention_dropout": 0.0,
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"bos_token_id": 151643,
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"dtype": "bfloat16",
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"eos_token_id": 151643,
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"hidden_act": "silu",
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"hidden_size": 1536,
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"initializer_range": 0.02,
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"intermediate_size": 8960,
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"layer_types": [
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention",
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"full_attention"
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],
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"max_position_embeddings": 131072,
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"max_window_layers": 28,
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"model_type": "qwen2",
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"num_attention_heads": 12,
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"num_hidden_layers": 28,
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"num_key_value_heads": 2,
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"pad_token_id": 151643,
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"rms_norm_eps": 1e-06,
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"rope_scaling": null,
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"rope_theta": 1000000.0,
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"sliding_window": null,
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"tie_word_embeddings": true,
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"transformers_version": "4.57.6",
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"use_cache": true,
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"use_mrope": false,
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"use_sliding_window": false,
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"vocab_size": 151936
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}
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generation_config.json
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{
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"bos_token_id": 151643,
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"eos_token_id": 151643,
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"max_new_tokens": 2048,
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"pad_token_id": 151643,
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"transformers_version": "4.57.6"
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}
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151388
merges.txt
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merges.txt
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model.safetensors
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:f54394f754163b0db205ee0cd892f80088ca261c39ab580f44be2cb6a22e8962
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size 3087467144
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special_tokens_map.json
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special_tokens_map.json
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{
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"additional_special_tokens": [
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"<|im_start|>",
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"<|im_end|>",
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"<|object_ref_start|>",
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"<|object_ref_end|>",
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"<|box_start|>",
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"<|box_end|>",
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"<|quad_start|>",
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"<|quad_end|>",
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"<|vision_start|>",
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"<|vision_end|>",
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"<|vision_pad|>",
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"<|image_pad|>",
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"<|video_pad|>"
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],
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"eos_token": {
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"content": "<|endoftext|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"pad_token": {
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"content": "<|endoftext|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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}
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}
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tokenizer.json
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tokenizer.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:9c5ae00e602b8860cbd784ba82a8aa14e8feecec692e7076590d014d7b7fdafa
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size 11421896
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{
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"add_bos_token": false,
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"add_prefix_space": false,
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"added_tokens_decoder": {
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"151643": {
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"content": "<|endoftext|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"151644": {
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"content": "<|im_start|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"151645": {
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"content": "<|im_end|>",
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"lstrip": false,
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"normalized": false,
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||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151646": {
|
||||||
|
"content": "<|object_ref_start|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151647": {
|
||||||
|
"content": "<|object_ref_end|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151648": {
|
||||||
|
"content": "<|box_start|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151649": {
|
||||||
|
"content": "<|box_end|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151650": {
|
||||||
|
"content": "<|quad_start|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151651": {
|
||||||
|
"content": "<|quad_end|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151652": {
|
||||||
|
"content": "<|vision_start|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151653": {
|
||||||
|
"content": "<|vision_end|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151654": {
|
||||||
|
"content": "<|vision_pad|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151655": {
|
||||||
|
"content": "<|image_pad|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151656": {
|
||||||
|
"content": "<|video_pad|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": true
|
||||||
|
},
|
||||||
|
"151657": {
|
||||||
|
"content": "<tool_call>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151658": {
|
||||||
|
"content": "</tool_call>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151659": {
|
||||||
|
"content": "<|fim_prefix|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151660": {
|
||||||
|
"content": "<|fim_middle|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151661": {
|
||||||
|
"content": "<|fim_suffix|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151662": {
|
||||||
|
"content": "<|fim_pad|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151663": {
|
||||||
|
"content": "<|repo_name|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
},
|
||||||
|
"151664": {
|
||||||
|
"content": "<|file_sep|>",
|
||||||
|
"lstrip": false,
|
||||||
|
"normalized": false,
|
||||||
|
"rstrip": false,
|
||||||
|
"single_word": false,
|
||||||
|
"special": false
|
||||||
|
}
|
||||||
|
},
|
||||||
|
"additional_special_tokens": [
|
||||||
|
"<|im_start|>",
|
||||||
|
"<|im_end|>",
|
||||||
|
"<|object_ref_start|>",
|
||||||
|
"<|object_ref_end|>",
|
||||||
|
"<|box_start|>",
|
||||||
|
"<|box_end|>",
|
||||||
|
"<|quad_start|>",
|
||||||
|
"<|quad_end|>",
|
||||||
|
"<|vision_start|>",
|
||||||
|
"<|vision_end|>",
|
||||||
|
"<|vision_pad|>",
|
||||||
|
"<|image_pad|>",
|
||||||
|
"<|video_pad|>"
|
||||||
|
],
|
||||||
|
"bos_token": null,
|
||||||
|
"clean_up_tokenization_spaces": false,
|
||||||
|
"eos_token": "<|endoftext|>",
|
||||||
|
"errors": "replace",
|
||||||
|
"extra_special_tokens": {},
|
||||||
|
"model_max_length": 131072,
|
||||||
|
"pad_token": "<|endoftext|>",
|
||||||
|
"split_special_tokens": false,
|
||||||
|
"tokenizer_class": "Qwen2Tokenizer",
|
||||||
|
"unk_token": null
|
||||||
|
}
|
||||||
1
vocab.json
Normal file
1
vocab.json
Normal file
File diff suppressed because one or more lines are too long
Reference in New Issue
Block a user