change file tree (#1859)

Co-authored-by: Chayenne <zhaochenyang@g.ucla.edu>

docs/Makefile

@@ -12,7 +12,18 @@ BUILDDIR      = _build
 help:
 	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
 
-.PHONY: help Makefile
+# New target to compile Markdown and Jupyter Notebook files
+compile:
+	find $(SOURCEDIR) -name '*.ipynb' | while read nb; do \
+		if [ -f "$$nb" ]; then \
+			echo "Executing $$nb"; \
+			jupyter nbconvert --to notebook --execute --inplace "$$nb" \
+				--ExecutePreprocessor.timeout=600 \
+				--ExecutePreprocessor.kernel_name=python3; \
+		fi; \
+	done
+
+.PHONY: help Makefile compile
 
 # Catch-all target: route all unknown targets to Sphinx using the new
 # "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).