change file tree (#1859)

Co-authored-by: Chayenne <zhaochenyang@g.ucla.edu>

.github/workflows/deploy-docs.yml

@@ -38,14 +38,8 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.PAT_TOKEN }}
         run: |
           cd docs
-          for nb in *.ipynb; do
-            if [ -f "$nb" ]; then
-              echo "Executing $nb"
-              jupyter nbconvert --to notebook --execute --inplace "$nb" \
-                --ExecutePreprocessor.timeout=600 \
-                --ExecutePreprocessor.kernel_name=python3
-            fi
-          done
+          make clean
+          make compile
 
           make html
           cd _build/html