From 9243757bf756615797e2b4914435a8979e92d7c0 Mon Sep 17 00:00:00 2001 From: ModelHub XC Date: Tue, 7 Jul 2026 03:56:15 +0800 Subject: [PATCH] =?UTF-8?q?=E5=88=9D=E5=A7=8B=E5=8C=96=E9=A1=B9=E7=9B=AE?= =?UTF-8?q?=EF=BC=8C=E7=94=B1ModelHub=20XC=E7=A4=BE=E5=8C=BA=E6=8F=90?= =?UTF-8?q?=E4=BE=9B=E6=A8=A1=E5=9E=8B?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Model: EPFLiGHT/EuroLLM-22B-MeditronFO Source: Original Platform --- .gitattributes | 36 + README.md | 132 ++ chat_template.jinja | 4 + config.json | 29 + model-00001-of-00010.safetensors | 3 + model-00002-of-00010.safetensors | 3 + model-00003-of-00010.safetensors | 3 + model-00004-of-00010.safetensors | 3 + model-00005-of-00010.safetensors | 3 + model-00006-of-00010.safetensors | 3 + model-00007-of-00010.safetensors | 3 + model-00008-of-00010.safetensors | 3 + model-00009-of-00010.safetensors | 3 + model-00010-of-00010.safetensors | 3 + model.safetensors.index.json | 496 +++++++ special_tokens_map.json | 30 + tokenizer.json | 3 + tokenizer.model | 3 + tokenizer_config.json | 2107 ++++++++++++++++++++++++++++++ 19 files changed, 2870 insertions(+) create mode 100644 .gitattributes create mode 100644 README.md create mode 100644 chat_template.jinja create mode 100644 config.json create mode 100644 model-00001-of-00010.safetensors create mode 100644 model-00002-of-00010.safetensors create mode 100644 model-00003-of-00010.safetensors create mode 100644 model-00004-of-00010.safetensors create mode 100644 model-00005-of-00010.safetensors create mode 100644 model-00006-of-00010.safetensors create mode 100644 model-00007-of-00010.safetensors create mode 100644 model-00008-of-00010.safetensors create mode 100644 model-00009-of-00010.safetensors create mode 100644 model-00010-of-00010.safetensors create mode 100644 model.safetensors.index.json create mode 100644 special_tokens_map.json create mode 100644 tokenizer.json create mode 100644 tokenizer.model create mode 100644 tokenizer_config.json diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..52373fe --- /dev/null +++ b/.gitattributes @@ -0,0 +1,36 @@ +*.7z filter=lfs diff=lfs merge=lfs -text +*.arrow filter=lfs diff=lfs merge=lfs -text +*.bin filter=lfs diff=lfs merge=lfs -text +*.bz2 filter=lfs diff=lfs merge=lfs -text +*.ckpt filter=lfs diff=lfs merge=lfs -text +*.ftz filter=lfs diff=lfs merge=lfs -text +*.gz filter=lfs diff=lfs merge=lfs -text +*.h5 filter=lfs diff=lfs merge=lfs -text +*.joblib filter=lfs diff=lfs merge=lfs -text +*.lfs.* filter=lfs diff=lfs merge=lfs -text +*.mlmodel filter=lfs diff=lfs merge=lfs -text +*.model filter=lfs diff=lfs merge=lfs -text +*.msgpack filter=lfs diff=lfs merge=lfs -text +*.npy filter=lfs diff=lfs merge=lfs -text +*.npz filter=lfs diff=lfs merge=lfs -text +*.onnx filter=lfs diff=lfs merge=lfs -text +*.ot filter=lfs diff=lfs merge=lfs -text +*.parquet filter=lfs diff=lfs merge=lfs -text +*.pb filter=lfs diff=lfs merge=lfs -text +*.pickle filter=lfs diff=lfs merge=lfs -text +*.pkl filter=lfs diff=lfs merge=lfs -text +*.pt filter=lfs diff=lfs merge=lfs -text +*.pth filter=lfs diff=lfs merge=lfs -text +*.rar filter=lfs diff=lfs merge=lfs -text +*.safetensors filter=lfs diff=lfs merge=lfs -text +saved_model/**/* filter=lfs diff=lfs merge=lfs -text +*.tar.* filter=lfs diff=lfs merge=lfs -text +*.tar filter=lfs diff=lfs merge=lfs -text +*.tflite filter=lfs diff=lfs merge=lfs -text +*.tgz filter=lfs diff=lfs merge=lfs -text +*.wasm filter=lfs diff=lfs merge=lfs -text +*.xz filter=lfs diff=lfs merge=lfs -text +*.zip filter=lfs diff=lfs merge=lfs -text +*.zst filter=lfs diff=lfs merge=lfs -text +*tfevents* filter=lfs diff=lfs merge=lfs -text +tokenizer.json filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md new file mode 100644 index 0000000..f5f3cf8 --- /dev/null +++ b/README.md @@ -0,0 +1,132 @@ +--- +license: apache-2.0 +language: +- en +library_name: transformers +pipeline_tag: text-generation +tags: +- medical +- clinical +- healthcare +- meditron +- fully-open +- medical-llm +base_model: utter-project/EuroLLM-22B-Instruct +base_model_relation: finetune +datasets: +- EPFLiGHT/fully-open-meditron +--- + +# EuroLLM-22B-MeditronFO + +
+ +
+

+ 👋 Join our LiGHT community. +
+ 📖 Check out the MeditronFO blog and MeditronFO preprint. +
+ 🔜 If you are a clinician join the MOOVE initiative here. +

+ +

+ [Hugging Face] + [Preprint] + [GitHub] + [Dataset] +
+ License: Apache 2.0 | Authors: LiGHT +

+ +> [!Note] +> We're introducing EuroLLM-22B-MeditronFO, our latest fully open medical specialist LLM, medical specialization of [EuroLLM-22B-Instruct](https://huggingface.co/utter-project/EuroLLM-22B-Instruct) on the [Fully Open Meditron Corpus](https://huggingface.co/datasets/EPFLiGHT/fully-open-meditron). This model is part of the **Fully Open Meditron** family — the first end-to-end auditable pipeline for clinical LLMs, with open weights, open data, open training recipe, and clinician-vetted corpus construction. + + +- **Part of the Fully Open Meditron family:** End to end fully open clinical LLMs +- **Is prefered over EuroLLM-22B in 61.7% of comparisons:** Comparison on the clinician validated LM judge evaluation AutoMOOVE. + +
+ +
+ + +## Performance + +Accuracy (%) on standard medical benchmarks. See the paper for full evaluation details, confidence intervals, and open-ended Auto-MOOVE results. + +| Benchmark | EuroLLM-22B-Instruct | **EuroLLM-22B-MeditronFO** | Δ | +|---|---:|---:|---:| +| MedMCQA | 54.94 | **54.79** | -0.15 | +| MedQA | 66.61 | **63.16** | -3.45 | +| PubMedQA | 73.60 | **78.00** | +4.40 | +| MedXpertQA | 14.61 | **14.61** | +0.00 | +| HealthBench Hard | 34.79 | **37.38** | +2.59 | +| **Average** | 48.91 | **49.59** | +0.68 | + +## Usage + +```python +from transformers import AutoModelForCausalLM, AutoTokenizer +import torch + +model_id = "EPFLiGHT/EuroLLM-22B-MeditronFO" +tokenizer = AutoTokenizer.from_pretrained(model_id) +model = AutoModelForCausalLM.from_pretrained( + model_id, + torch_dtype=torch.bfloat16, + device_map="auto", +) + +messages = [ + {"role": "user", "content": "A 62-year-old woman presents with a three-day history of dyspnea on exertion and a productive cough. What is the differential diagnosis?"}, +] +inputs = tokenizer.apply_chat_template( + messages, + add_generation_prompt=True, + tokenize=True, + return_dict=True, + return_tensors="pt", +).to(model.device) + +outputs = model.generate(**inputs, max_new_tokens=512, do_sample=False) +print(tokenizer.decode(outputs[0][inputs["input_ids"].shape[-1]:], skip_special_tokens=True)) +``` + +## Training + +- **Base model:** [EuroLLM-22B-Instruct](https://huggingface.co/utter-project/EuroLLM-22B-Instruct) +- **Corpus:** [Fully Open Meditron](https://huggingface.co/datasets/EPFLiGHT/fully-open-meditron) 601k examples (~150M tokens), aggregating eight public medical QA datasets with three clinician-vetted synthetic components: exam-style QA, guideline-grounded QA from 46,469 clinical practice guidelines, and open-ended clinical vignettes +- **Hardware:** 8 NVIDIA GH200 nodes +- **Framework:** Axolotl with FSDP v2 / DeepSpeed ZeRO-3, Flash Attention 2, bf16 mixed precision +- **Decontamination:** System-wide two-stage n-gram and token-alignment decontamination against all evaluation benchmarks + +Full hyperparameters are in Appendix I of the paper. + +## Compute & footprint +The training was done on 8 nodes of 4 NVIDIA GH200 GPUs for approximately 6 hours on the CSCS Swiss National Supercomputing Centre. +Our trainings have a carbon neutral footprint as the CSCS data center is carbon neutral ([CSCS energy efficiency](https://ethz.ch/en/news-and-events/eth-news/news/2022/11/at-cscs-energy-efficiency-is-a-key-priority-even-at-high-performance.html)). + +## Limitations & intended use + +MeditronFO can produce text on a variety of topics, but the generated content may not always be factually accurate, logically consistent, or free from biases present in the training data. MeditronFO has been trained to be specialised for Medicine and is intended to be used for Medicine related tasks evaluation. These models should be used as assistive tools rather than definitive sources of information. Users should always verify important information and critically evaluate any generated content. + +## Citation + +If you find MeditronFO useful in your research, please cite our preprint: + +```bibtex +@misc{theimerlienhard2026fullyopenmeditronauditable, + title = {Fully Open Meditron: An Auditable Pipeline for Clinical LLMs}, + author = {Xavier Theimer-Lienhard and Mushtaha El-Amin and Fay Elhassan and Sahaj Vaidya and Victor Cartier-Negadi and David Sasu and Lars Klein and Mary-Anne Hartley}, + year = {2026}, + eprint = {2605.16215}, + archivePrefix = {arXiv}, + primaryClass = {cs.AI}, + url = {https://arxiv.org/abs/2605.16215} +} +``` + +## Contact +Please use the community tab for any discussions or issue related to this model. +Questions related to the project can be sent to xavier.theimer-lienhard@epfl.ch or mary-anne.hartley@epfl.ch. \ No newline at end of file diff --git a/chat_template.jinja b/chat_template.jinja new file mode 100644 index 0000000..2116e45 --- /dev/null +++ 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