BAAI/OPI-Llama-3.1-8B-Instruct
1
0
Fork 0
Code Issues Pull Requests Actions Projects Releases Wiki Activity

初始化项目，由ModelHub XC社区提供模型

Browse Source 
Model: BAAI/OPI-Llama-3.1-8B-Instruct
Source: Original Platform
This commit is contained in:
ModelHub XC
2026-05-18 18:14:07 +08:00
commit 2d345a97c0
26 changed files with 501677 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

41
.gitattributes vendored Normal file
View File

@@ -0,0 +1,41 @@
*.7z filter=lfs diff=lfs merge=lfs -text
*.arrow filter=lfs diff=lfs merge=lfs -text
*.bin filter=lfs diff=lfs merge=lfs -text
*.bz2 filter=lfs diff=lfs merge=lfs -text
*.ckpt filter=lfs diff=lfs merge=lfs -text
*.ftz filter=lfs diff=lfs merge=lfs -text
*.gz filter=lfs diff=lfs merge=lfs -text
*.h5 filter=lfs diff=lfs merge=lfs -text
*.joblib filter=lfs diff=lfs merge=lfs -text
*.lfs.* filter=lfs diff=lfs merge=lfs -text
*.mlmodel filter=lfs diff=lfs merge=lfs -text
*.model filter=lfs diff=lfs merge=lfs -text
*.msgpack filter=lfs diff=lfs merge=lfs -text
*.npy filter=lfs diff=lfs merge=lfs -text
*.npz filter=lfs diff=lfs merge=lfs -text
*.onnx filter=lfs diff=lfs merge=lfs -text
*.ot filter=lfs diff=lfs merge=lfs -text
*.parquet filter=lfs diff=lfs merge=lfs -text
*.pb filter=lfs diff=lfs merge=lfs -text
*.pickle filter=lfs diff=lfs merge=lfs -text
*.pkl filter=lfs diff=lfs merge=lfs -text
*.pt filter=lfs diff=lfs merge=lfs -text
*.pth filter=lfs diff=lfs merge=lfs -text
*.rar filter=lfs diff=lfs merge=lfs -text
*.safetensors filter=lfs diff=lfs merge=lfs -text
saved_model/**/* filter=lfs diff=lfs merge=lfs -text
*.tar.* filter=lfs diff=lfs merge=lfs -text
*.tar filter=lfs diff=lfs merge=lfs -text
*.tflite filter=lfs diff=lfs merge=lfs -text
*.tgz filter=lfs diff=lfs merge=lfs -text
*.wasm filter=lfs diff=lfs merge=lfs -text
*.xz filter=lfs diff=lfs merge=lfs -text
*.zip filter=lfs diff=lfs merge=lfs -text
*.zst filter=lfs diff=lfs merge=lfs -text
*tfevents* filter=lfs diff=lfs merge=lfs -text
demo_figures/OPI_demo.gif filter=lfs diff=lfs merge=lfs -text
model_compare/task2_fold_type.png filter=lfs diff=lfs merge=lfs -text
model_compare/task3_subcell_loc.png filter=lfs diff=lfs merge=lfs -text
model_compare/task5_GO.png filter=lfs diff=lfs merge=lfs -text
model_compare/task6_function.png filter=lfs diff=lfs merge=lfs -text
model_compare/task7_gsymbol2tissue.png filter=lfs diff=lfs merge=lfs -text

216
README.md Normal file
View File

@@ -0,0 +1,216 @@
---
license: llama3.1
datasets:
- BAAI/OPI
language:
- en
pipeline_tag: text-generation
tags:
- Life Science
- AI4Science
- Biology
- Protein
- LLM
- Instruction
base_model: meta-llama/Meta-Llama-3.1-8B-Instruct
---
![OPI_logo](demo_figures/OPI_logo.png)
# Github:
https://github.com/baaihealth/opi
# Paper:
[OPI: An Open Instruction Dataset for Adapting Large Language Models to Protein-Related Tasks](https://neurips.cc/virtual/2024/105921) has been accepted by [NeurIPS 2024 Workshop: Foundation Models for Science: Progress, Opportunities, and Challenges](https://neurips.cc/virtual/2024/workshop/84714).
# Model Card of OPI-Llama-3.1-8B-Instruct
OPI-Llama-3.1-8B-Instruct was fine-tuned from the Meta-Llama-3.1-8B-Instruct model using the complete OPI training set (i.e.,[OPI_full_1.61M_train.json](https://huggingface.co/datasets/BAAI/OPI/blob/main/OPI_DATA/OPI_full_1.61M_train.json)).
For more details of training and testing, please visit [https://github.com/baaihealth/opi](https://github.com/baaihealth/opi).
![Overview](demo_figures/OPI_experiment_outline.png)
# Evaluation of OPI-Llama-3.1-8B-Instruct on 9 tasks
Each testing result is derived from the Meta-Llama-3.1-8B-Instruct model that has been fine-tuned using [OPI_full_1.61M.json](https://huggingface.co/datasets/BAAI/OPI/blob/main/OPI_DATA/OPI_full_1.61M_train.json) and subsequently evaluated on the respective testing set for each specific task.
<table border="1" style="text-align:center; border-collapse:collapse; width: 100%;">
<thead>
<tr>
<th style="text-align:center;">Task Type</th>
<th style="text-align:center;">Task Name</th>
<th style="text-align:center;">Testing file</th>
<th style="text-align:center;">Accuracy</th>
<th style="text-align:center;">Precision</th>
<th style="text-align:center;">Recall</th>
<th style="text-align:center;">F1</th>
<th style="text-align:center;">Rouge-L</th>
</tr>
</thead>
<tbody>
<tr>
<td rowspan="6">Sequence Understanding</td>
<td rowspan="2">EC Number Prediction (split100)</td>
<td>CLEAN_EC_number_new_test</td>
<td>-</td>
<td>0.3724</td>
<td>0.3374</td>
<td>0.3468</td>
<td>-</td>
</tr>
<tr>
<td>CLEAN_EC_number_price_test</td>
<td>-</td>
<td>0.0738</td>
<td>0.0738</td>
<td>0.0738</td>
<td>-</td>
</tr>
<tr>
<td rowspan="3">Fold Type Prediction</td>
<td>fold_type_test_Fold_Holdout</td>
<td>0.1045</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>fold_type_test_Superfamily_Holdout</td>
<td>0.1507</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>fold_type_test_Family_Holdout</td>
<td>0.6145</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>Subcellular Localization Prediction</td>
<td>subcell_loc_test</td>
<td>0.4214</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td rowspan="9">Annotation Prediction</td>
<td rowspan="3">Function Keywords Prediction</td>
<td>CASPSimilarSeq_keywords_test</td>
<td>-</td>
<td>0.4202</td>
<td>0.5057</td>
<td>0.4385</td>
<td>-</td>
</tr>
<tr>
<td>IDFilterSeq_keywords_test</td>
<td>-</td>
<td>0.6762</td>
<td>0.6905</td>
<td>0.6650</td>
<td>-</td>
</tr>
<tr>
<td>UniProtSeq_keywords_test</td>
<td>-</td>
<td>0.7606</td>
<td>0.7489</td>
<td>0.7374</td>
<td>-</td>
</tr>
<tr>
<td rowspan="3">Gene Ontology(GO) Terms Prediction</td>
<td>CASPSimilarSeq_go_terms_test</td>
<td>-</td>
<td>0.1113</td>
<td>0.0936</td>
<td>0.099</td>
<td>-</td>
</tr>
<tr>
<td>IDFilterSeq_go_terms_test</td>
<td>-</td>
<td>0.6686</td>
<td>0.6287</td>
<td>0.6304</td>
<td>-</td>
</tr>
<tr>
<td>UniProtSeq_go_terms_test</td>
<td>-</td>
<td>0.7150</td>
<td>0.6897</td>
<td>0.6849</td>
<td>-</td>
</tr>
<tr>
<td rowspan="3">Function Description Prediction</td>
<td>CASPSimilarSeq_function_test</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>0.7524</td>
</tr>
<tr>
<td>IDFilterSeq_function_test</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>0.4786</td>
</tr>
<tr>
<td>UniProtSeq_function_test</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>-</td>
<td>0.5144</td>
</tr>
<tr>
<td rowspan="3">Knowledge Mining</td>
<td>Tissue Location Prediction from Gene Symbol</td>
<td>gene_symbol_to_tissue_test</td>
<td>-</td>
<td>0.4002</td>
<td>0.9356</td>
<td>0.5466</td>
<td>-</td>
</tr>
<tr>
<td>Cancer Prediction from Gene Symbol</td>
<td>gene_symbol_to_cancer_test</td>
<td>-</td>
<td>0.2890</td>
<td>0.2701</td>
<td>0.2664</td>
<td>-</td>
</tr>
<tr>
<td>Cancer Prediction from Gene Name</td>
<td>gene_name_to_cancer_test</td>
<td>-</td>
<td>0.2786</td>
<td>0.2707</td>
<td>0.2659</td>
<td>-</td>
</tr>
</tbody>
</table>
# Prediction comparison with SOTA mdoels
![model_compare](model_compare/task1_EC_number.png)
![model_compare](model_compare/task2_fold_type.png)
![model_compare](model_compare/task3_subcell_loc.png)
![model_compare](model_compare/task4_keywords.png)
![model_compare](model_compare/task5_GO.png)
![model_compare](model_compare/task6_function.png)
![model_compare](model_compare/task7_gsymbol2tissue.png)
![model_compare](model_compare/task8_gsymbol2cancer.png)
![model_compare](model_compare/task9_gname2cancer.png)

39
config.json Normal file
View File

@@ -0,0 +1,39 @@
{
"_name_or_path": "Llama3.1/Llama-3.1-8B-Instruct",
"architectures": [
"LlamaForCausalLM"
],
"attention_bias": false,
"attention_dropout": 0.0,
"bos_token_id": 128000,
"eos_token_id": [
128001,
128008,
128009
],
"hidden_act": "silu",
"hidden_size": 4096,
"initializer_range": 0.02,
"intermediate_size": 14336,
"max_position_embeddings": 131072,
"mlp_bias": false,
"model_type": "llama",
"num_attention_heads": 32,
"num_hidden_layers": 32,
"num_key_value_heads": 8,
"pretraining_tp": 1,
"rms_norm_eps": 1e-05,
"rope_scaling": {
"factor": 8.0,
"high_freq_factor": 4.0,
"low_freq_factor": 1.0,
"original_max_position_embeddings": 8192,
"rope_type": "dynamic"
},
"rope_theta": 500000.0,
"tie_word_embeddings": false,
"torch_dtype": "bfloat16",
"transformers_version": "4.41.2",
"use_cache": true,
"vocab_size": 128256
}

1
configuration.json Normal file
View File

@@ -0,0 +1 @@
{"framework": "pytorch", "task": "text-generation", "allow_remote": true}

BIN
demo_figures/OPI_experiment_outline.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 816 KiB

BIN
demo_figures/OPI_logo.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 132 KiB

12
generation_config.json Normal file
View File

@@ -0,0 +1,12 @@
{
"bos_token_id": 128000,
"do_sample": true,
"eos_token_id": [
128001,
128008,
128009
],
"temperature": 0.6,
"top_p": 0.9,
"transformers_version": "4.41.2"
}

3
model-00001-of-00004.safetensors Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:5fa36b9fd675f3f9caa70138a9d212ce6e36bad904e5a366634d8a770f6ca604
size 4976698672

3
model-00002-of-00004.safetensors Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:349d83a450f53800b5aff83d4e26fffbbd0c64b82a84442fddbfe4b8d7097939
size 4999802720

3
model-00003-of-00004.safetensors Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:1e3907953b3ad501600375969cbd74e1611b8e16d469466ba678b121559597fc
size 4915916176

3
model-00004-of-00004.safetensors Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:f334d722284b1240b8d5751266fc03ecd4e4f908173f0a8a0f85cd4268f84ff9
size 1168138808

298
model.safetensors.index.json Normal file
View File

@@ -0,0 +1,298 @@
{
"metadata": {
"total_size": 16060522496
},
"weight_map": {
"lm_head.weight": "model-00004-of-00004.safetensors",
"model.embed_tokens.weight": "model-00001-of-00004.safetensors",
"model.layers.0.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.0.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.0.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.0.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.1.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.1.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.1.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.10.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.10.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.10.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.10.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.11.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.11.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.11.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.12.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.12.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.12.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.13.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.13.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.13.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.14.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.14.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.14.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.15.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.15.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.15.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.16.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.16.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.16.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.17.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.17.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.17.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.18.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.18.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.18.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.19.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.19.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.19.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.2.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.2.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.2.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.2.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.20.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.20.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.20.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.20.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.20.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.20.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.20.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.20.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.20.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.21.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.21.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.21.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.21.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.22.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.22.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.22.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.23.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.23.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.23.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.24.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.24.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.24.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.25.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.25.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.25.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.26.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.26.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.26.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.27.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.27.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.27.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.28.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.28.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.28.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.29.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.29.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.29.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.3.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.3.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.3.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.3.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.30.input_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.30.mlp.down_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.post_attention_layernorm.weight": "model-00003-of-00004.safetensors",
"model.layers.30.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.30.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.input_layernorm.weight": "model-00004-of-00004.safetensors",
"model.layers.31.mlp.down_proj.weight": "model-00004-of-00004.safetensors",
"model.layers.31.mlp.gate_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.mlp.up_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.post_attention_layernorm.weight": "model-00004-of-00004.safetensors",
"model.layers.31.self_attn.k_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.self_attn.o_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.self_attn.q_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.31.self_attn.v_proj.weight": "model-00003-of-00004.safetensors",
"model.layers.4.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.4.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.4.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.4.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.5.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.5.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.5.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.6.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.6.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.6.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.7.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.7.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.7.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.input_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.8.mlp.down_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.mlp.gate_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.mlp.up_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.post_attention_layernorm.weight": "model-00001-of-00004.safetensors",
"model.layers.8.self_attn.k_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.self_attn.o_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.self_attn.q_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.8.self_attn.v_proj.weight": "model-00001-of-00004.safetensors",
"model.layers.9.input_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.9.mlp.down_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.mlp.gate_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.mlp.up_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.post_attention_layernorm.weight": "model-00002-of-00004.safetensors",
"model.layers.9.self_attn.k_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.self_attn.o_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.self_attn.q_proj.weight": "model-00002-of-00004.safetensors",
"model.layers.9.self_attn.v_proj.weight": "model-00002-of-00004.safetensors",
"model.norm.weight": "model-00004-of-00004.safetensors"
}
}

BIN
model_compare/task1_EC_number.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 945 KiB

3
model_compare/task2_fold_type.png Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:193b26b37a41a24b76f299bf9a43bf8844e2f5ff531fa26c6f1dba4b747d4e42
size 1010702

3
model_compare/task3_subcell_loc.png Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:ef07b3e2e048ad1428e6c597a363762fcb38f211c3de2b22edac13d37adc45ac
size 1744696

BIN
model_compare/task4_keywords.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 969 KiB

3
model_compare/task5_GO.png Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:1ed0be683af9a094854fe50b88c576b20a95235789901e767f9db73347455396
size 1418606

3
model_compare/task6_function.png Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:fc84d5e01ea43834a3f4252bb7365e629c5e81adb4b2abacce54822b71b9dd8b
size 1291815

3
model_compare/task7_gsymbol2tissue.png Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:02cdb5908a5f16b60e9c7a07c92a2f3dc4f946d3700876826efbfa846923b4dd
size 1034061

BIN
model_compare/task8_gsymbol2cancer.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 574 KiB

BIN
model_compare/task9_gname2cancer.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 667 KiB

17
special_tokens_map.json Normal file
View File

@@ -0,0 +1,17 @@
{
"bos_token": {
"content": "<|begin_of_text|>",
"lstrip": false,
"normalized": false,
"rstrip": false,
"single_word": false
},
"eos_token": {
"content": "<|eot_id|>",
"lstrip": false,
"normalized": false,
"rstrip": false,
"single_word": false
},
"pad_token": "<|eot_id|>"
}

410563
tokenizer.json Normal file
View File

File diff suppressed because it is too large Load Diff

2064
tokenizer_config.json Normal file
View File

File diff suppressed because it is too large Load Diff

88396
trainer_state.json Normal file
View File

File diff suppressed because it is too large Load Diff

3
training_args.bin Normal file
View File

@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:49e0b737b98ccd726cd9b4147178613185508d0578bb09a707a3008c55b6aeea
size 6968