commit 19b09979ce3ad6a933c6ab856bfc8b87fa26d0f5 Author: ModelHub XC Date: Sun Apr 12 12:49:57 2026 +0800 初始化项目,由ModelHub XC社区提供模型 Model: AdaptLLM/medicine-LLM-13B Source: Original Platform diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..c406d93 --- /dev/null +++ b/.gitattributes @@ -0,0 +1,47 @@ +*.7z filter=lfs diff=lfs merge=lfs -text +*.arrow filter=lfs diff=lfs merge=lfs -text +*.bin filter=lfs diff=lfs merge=lfs -text +*.bz2 filter=lfs diff=lfs merge=lfs -text +*.ckpt filter=lfs diff=lfs merge=lfs -text +*.ftz filter=lfs diff=lfs merge=lfs -text +*.gz filter=lfs diff=lfs merge=lfs -text +*.h5 filter=lfs diff=lfs merge=lfs -text +*.joblib filter=lfs diff=lfs merge=lfs -text +*.lfs.* filter=lfs diff=lfs merge=lfs -text +*.mlmodel filter=lfs diff=lfs merge=lfs -text +*.model filter=lfs diff=lfs merge=lfs -text +*.msgpack filter=lfs diff=lfs merge=lfs -text +*.npy filter=lfs diff=lfs merge=lfs -text +*.npz filter=lfs diff=lfs merge=lfs -text +*.onnx filter=lfs diff=lfs merge=lfs -text +*.ot filter=lfs diff=lfs merge=lfs -text +*.parquet filter=lfs diff=lfs merge=lfs -text +*.pb filter=lfs diff=lfs merge=lfs -text +*.pickle filter=lfs diff=lfs merge=lfs -text +*.pkl filter=lfs diff=lfs merge=lfs -text +*.pt filter=lfs diff=lfs merge=lfs -text +*.pth filter=lfs diff=lfs merge=lfs -text +*.rar filter=lfs diff=lfs merge=lfs -text +*.safetensors filter=lfs diff=lfs merge=lfs -text +saved_model/**/* filter=lfs diff=lfs merge=lfs -text +*.tar.* filter=lfs diff=lfs merge=lfs -text +*.tar filter=lfs diff=lfs merge=lfs -text +*.tflite filter=lfs diff=lfs merge=lfs -text +*.tgz filter=lfs diff=lfs merge=lfs -text +*.wasm filter=lfs diff=lfs merge=lfs -text +*.xz filter=lfs diff=lfs merge=lfs -text +*.zip filter=lfs diff=lfs merge=lfs -text +*.zst filter=lfs diff=lfs merge=lfs -text +*tfevents* filter=lfs diff=lfs merge=lfs -text +model-00001-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +model-00002-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +model-00003-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +model-00004-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +model-00005-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +model-00006-of-00006.safetensors filter=lfs diff=lfs merge=lfs -text +pytorch_model-00001-of-00006.bin filter=lfs diff=lfs merge=lfs -text +pytorch_model-00002-of-00006.bin filter=lfs diff=lfs merge=lfs -text +pytorch_model-00003-of-00006.bin filter=lfs diff=lfs merge=lfs -text +pytorch_model-00004-of-00006.bin filter=lfs diff=lfs merge=lfs -text +pytorch_model-00005-of-00006.bin filter=lfs diff=lfs merge=lfs -text +pytorch_model-00006-of-00006.bin filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md new file mode 100644 index 0000000..d9483e8 --- /dev/null +++ b/README.md @@ -0,0 +1,139 @@ +--- +language: +- en +datasets: +- Open-Orca/OpenOrca +- GAIR/lima +- WizardLM/WizardLM_evol_instruct_V2_196k +- EleutherAI/pile +metrics: +- accuracy +pipeline_tag: text-generation +tags: +- biology +- medical +license: apache-2.0 +--- + +# Adapting LLMs to Domains via Continual Pre-Training (ICLR 2024) +This repo contains the domain-specific base model developed from **LLaMA-1-13B**, using the method in our paper [Adapting Large Language Models via Reading Comprehension](https://huggingface.co/papers/2309.09530). + +We explore **continued pre-training on domain-specific corpora** for large language models. While this approach enriches LLMs with domain knowledge, it significantly hurts their prompting ability for question answering. Inspired by human learning via reading comprehension, we propose a simple method to **transform large-scale pre-training corpora into reading comprehension texts**, consistently improving prompting performance across tasks in biomedicine, finance, and law domains. **Our 7B model competes with much larger domain-specific models like BloombergGPT-50B**. + +### [2024/11/29] 🤗 Introduce the multimodal version of AdaptLLM at [AdaMLLM](https://huggingface.co/papers/2411.19930), for adapting MLLMs to domains 🤗 + +**************************** **Updates** **************************** +* 2024/11/29: Released [AdaMLLM](https://huggingface.co/AdaptLLM/Adapt-MLLM-to-Domains) for adapting MLLMs to domains +* 2024/9/20: Our [research paper for Instruction-Pretrain](https://huggingface.co/papers/2406.14491) has been accepted by EMNLP 2024 +* 2024/8/29: Updated [guidelines](https://huggingface.co/datasets/AdaptLLM/finance-tasks) on evaluating any 🤗Huggingface models on the domain-specific tasks +* 2024/6/22: Released the [benchmarking code](https://github.com/microsoft/LMOps/tree/main/adaptllm) +* 2024/6/21: Released the general version of AdaptLLM at [Instruction-Pretrain](https://huggingface.co/instruction-pretrain) +* 2024/4/2: Released the [raw data splits (train and test)](https://huggingface.co/datasets/AdaptLLM/ConvFinQA) of all the evaluation datasets +* 2024/1/16: Our [research paper for AdaptLLM](https://huggingface.co/papers/2309.09530) has been accepted by ICLR 2024 +* 2023/12/19: Released our [13B base models](https://huggingface.co/AdaptLLM/law-LLM-13B) developed from LLaMA-1-13B +* 2023/12/8: Released our [chat models](https://huggingface.co/AdaptLLM/law-chat) developed from LLaMA-2-Chat-7B +* 2023/9/18: Released our [paper](https://huggingface.co/papers/2309.09530), [code](https://github.com/microsoft/LMOps), [data](https://huggingface.co/datasets/AdaptLLM/law-tasks), and [base models](https://huggingface.co/AdaptLLM/law-LLM) developed from LLaMA-1-7B + + +## 1. Domain-Specific Models +### LLaMA-1-7B +In our paper, we develop three domain-specific models from LLaMA-1-7B, which are also available in Huggingface: [Biomedicine-LLM](https://huggingface.co/AdaptLLM/medicine-LLM), [Finance-LLM](https://huggingface.co/AdaptLLM/finance-LLM) and [Law-LLM](https://huggingface.co/AdaptLLM/law-LLM), the performances of our AdaptLLM compared to other domain-specific LLMs are: + +

+ +

+ +### LLaMA-1-13B +Moreover, we scale up our base model to LLaMA-1-13B to see if **our method is similarly effective for larger-scale models**, and the results are consistently positive too: [Biomedicine-LLM-13B](https://huggingface.co/AdaptLLM/medicine-LLM-13B), [Finance-LLM-13B](https://huggingface.co/AdaptLLM/finance-LLM-13B) and [Law-LLM-13B](https://huggingface.co/AdaptLLM/law-LLM-13B). + +### LLaMA-2-Chat +Our method is also effective for aligned models! LLaMA-2-Chat requires a [specific data format](https://huggingface.co/blog/llama2#how-to-prompt-llama-2), and our **reading comprehension can perfectly fit the data format** by transforming the reading comprehension into a multi-turn conversation. We have also open-sourced chat models in different domains: [Biomedicine-Chat](https://huggingface.co/AdaptLLM/medicine-chat), [Finance-Chat](https://huggingface.co/AdaptLLM/finance-chat) and [Law-Chat](https://huggingface.co/AdaptLLM/law-chat) + +For example, to chat with the biomedicine model (💗 An amazing [usage example](https://huggingface.co/AdaptLLM/medicine-LLM-13B/discussions/2)): +```python +from transformers import AutoModelForCausalLM, AutoTokenizer + +model = AutoModelForCausalLM.from_pretrained("AdaptLLM/medicine-LLM-13B") +tokenizer = AutoTokenizer.from_pretrained("AdaptLLM/medicine-LLM-13B", use_fast=False) + +# Put your input here: +user_input = '''Question: Which of the following is an example of monosomy? +Options: +- 46,XX +- 47,XXX +- 69,XYY +- 45,X + +Please provide your choice first and then provide explanations if possible.''' + +# Simply use your input as the prompt for base models +prompt = user_input + +inputs = tokenizer(prompt, return_tensors="pt", add_special_tokens=False).input_ids.to(model.device) +outputs = model.generate(input_ids=inputs, max_length=2048)[0] + +answer_start = int(inputs.shape[-1]) +pred = tokenizer.decode(outputs[answer_start:], skip_special_tokens=True) + +print(pred) +``` + +### LLaMA-3-8B (💡New!) +In our recent research on [Instruction-Pretrain](https://huggingface.co/papers/2406.14491), we developed a context-based instruction synthesizer to augment the raw corpora with instruction-response pairs, **enabling Llama3-8B to be comparable to or even outperform Llama3-70B**: [Finance-Llama3-8B](https://huggingface.co/instruction-pretrain/finance-Llama3-8B), [Biomedicine-Llama3-8B](https://huggingface.co/instruction-pretrain/medicine-Llama3-8B). + +## 2. Domain-Specific Tasks + +### Pre-templatized Testing Splits +To easily reproduce our prompting results, we have uploaded the filled-in zero/few-shot input instructions and output completions of the test each domain-specific task: [biomedicine-tasks](https://huggingface.co/datasets/AdaptLLM/medicine-tasks), [finance-tasks](https://huggingface.co/datasets/AdaptLLM/finance-tasks), and [law-tasks](https://huggingface.co/datasets/AdaptLLM/law-tasks). + +Note: those filled-in instructions are specifically tailored for models before alignment and do NOT fit for the specific data format required for chat models. + +### Evaluating Any Huggingface LMs on Domain-Specific Tasks (💡New!) +You can use the following script to reproduce our results and evaluate any other Huggingface models on domain-specific tasks. Note that the script is NOT applicable to models that require specific prompt templates (e.g., Llama2-chat, Llama3-Instruct). + +1). **Set Up Dependencies** + ```bash + git clone https://github.com/microsoft/LMOps + cd LMOps/adaptllm + pip install -r requirements.txt + ``` + +2). **Evaluate the Model** + ```bash + # Select the domain from ['biomedicine', 'finance', 'law'] + DOMAIN='biomedicine' + + # Specify any Huggingface model name (Not applicable to chat models) + MODEL='AdaptLLM/medicine-LLM-13B' + + # Model parallelization: + # - Set MODEL_PARALLEL=False if the model fits on a single GPU. + # We observe that LMs smaller than 10B always meet this requirement. + # - Set MODEL_PARALLEL=True if the model is too large and encounters OOM on a single GPU. + MODEL_PARALLEL=True + + # Choose the number of GPUs from [1, 2, 4, 8] + N_GPU=2 + + # Whether to add a BOS token at the beginning of the prompt input: + # - Set to False for AdaptLLM. + # - Set to True for instruction-pretrain models. + # If unsure, we recommend setting it to False, as this is suitable for most LMs. + add_bos_token=False + + # Run the evaluation script + bash scripts/inference.sh ${DOMAIN} ${MODEL} ${add_bos_token} ${MODEL_PARALLEL} ${N_GPU} + ``` + +## Citation +If you find our work helpful, please cite us: +```bibtex +@inproceedings{ +cheng2024adapting, +title={Adapting Large Language Models via Reading Comprehension}, +author={Daixuan Cheng and Shaohan Huang and Furu Wei}, +booktitle={The Twelfth International Conference on Learning Representations}, +year={2024}, +url={https://openreview.net/forum?id=y886UXPEZ0} +} +``` \ No newline at end of file diff --git a/config.json b/config.json new file mode 100644 index 0000000..1a63af9 --- /dev/null +++ b/config.json @@ -0,0 +1,24 @@ +{ + "_name_or_path": "/home/sgugger/tmp/llama/llama-13b/", + "architectures": [ + "LlamaForCausalLM" + ], + "bos_token_id": 1, + "eos_token_id": 2, + "hidden_act": "silu", + "hidden_size": 5120, + 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